In the meantime, "Dr. Albert Hirsch (Albert Finney), who ran Treadstone's behavior modification program" is told "that Bourne is en route."
"[O]utside the building" another senior CIA "admits to [Bourne] her change of heart; that she's helping him because she hadn't signed up for programs like" those that made Bourne originally into a kill-on-demand-all-perceived-enemies of America.
Meanwhile, the senior CIA agent "faxes them [the documents from Bourne] to a secondary witness ". Bourne meets with Hirsch in an upper level room and, with Hirsch's help, finally recollects that he was not forced into the program, but in fact volunteered. He proclaims to no longer be "Jason Bourne" and flees"."
http://en.wikipedia.org/wiki/The_Bourne_Ultimatum_%28film%29
As the audience gets up to leave, the basic messages in the last few minutes of the film have been clear:
(1) America must do better than simply creating assassination machines out of people.
(2) American CIA and intelligence services should not misplay or overplay the patriot card, i.e. taking America and its volunteer-foot-soldiers further and further away from integrity and any idealized role-model position in the world.
(3) America and its agents around the world need to mature, grow up, and think out of the box rather than shooting or bombing whatever troubles us.
(4) America and its agents need to admit when wrong has been done and give up all bad identities, i.e. turning from the crimes and sins of our present & past.
A mobie soundtrack plays "Bourne's Ultimatum":
http://www.youtube.com/watch?v=dgCt4gP68Rs&feature=fvst
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