But, even during the demonstrations in Tahrir Square, the Army was accused of roughing up and arresting many anti-government demonstrators, torturing them in custody, and holding some of these civilians for military trials. Their actions sparked an outcry from the anti-Mubarak forces and an investigation by the Army Supreme Council, which is running the country until elections are held.
In recent weeks, Amnesty International has documented the continuing use of torture, arbitrary detention, trials of civilians before military courts and repression of freedom of expression by authorities.
After the army violently cleared Tahrir Square of demonstrators on 9 March, women protesters told Amnesty International that they were beaten, given electric shocks, subjected to strip searches, then forced to submit to "virginity checks" and threatened with prostitution charges.
Many revolutionaries and others have expressed serious concerns over the
performance of the SCAF, such as the continuation of military trials for
civilians, and the relatively slow pace of certain reforms, including the
dismantling of local councils and the prosecution of corrupt figures from the
former regime.
"That's what we were out protesting against on 9 March," said Hazem, a
30-year-old granite contractor who was arrested by military police during the 9 March protests in Tahrir. A judge in a military court gave him a quick trial and sentenced him to three years on charges of "thuggery".
Hazem, whose name has been changed for his safety, spoke to the Al-Masry Al-Youm newspaper by phone from Tora prison.
"They interrogated us for 10 minutes in the kitchen of the military police
prison before quickly giving the sentence," he said.
Military trials are perhaps the main concern of human rights organizations
regarding SCAF performance so far. At least 40 people out of a group of 150 who were arrested on 9 March remain in prison, having been tried as "thugs", says Hazem. Legal activists say that at least 130 of the 150 arrested were recognizable figures from the Tahrir uprising that led to Hosni Mubarak's resignation.
Many caught by the military so far say that military police beat and insulted
them more severely than the State Security aparatus ever did under Mubarak.
"When they arrested us, they continuously beat us for seven hours straight
without even looking at our IDs and checking who we were," said Hany Adel, another 9 March detainee who is now in Tora prison.
Human Rights Watch has criticized torture in military prisons, as well as many military arrests and trials, such as the recent one of blogger Michael Nabil.
While the military denies any systematic use of torture or abuse -- including
"virginity tests" for women -- activists feel the evidence suggests that the
military is guilty as charged.
"There are too many similarities between the acts of physical and verbal
assaults in military prisons from all over to say that they are individual and
sporadic incidents," said Mona Seif of the "No to Military Trials" campaign.
Evidence gathered by the campaign shows that many of the detentions were of known revolutionary faces, picked out by informants.
"They made fun of us and said things like 'Do you think you will change the
world!?'" said Hazem.
With the ongoing sparcity of law enforcement on the streets, the strict
anti-thuggery laws are generally accepted as being necessary, by Egyptian
activists and laymen alike. The law was made very public, and the military
constantly lauded any resulting arrests and sentences. However, with their quick trials and harsh penalties, anti-thuggery laws have created a system by which many revolutionaries and innocent people are not given due process.
Some inmates in Tora have told Al-Masry Al-Youm that they were arrested, beaten and put in prison without having once shown their IDs to any military personnel.
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